Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015812699.1_cds_XP_016497245.1_11391
CDS Infomation

[gene=LOC107816087] [db_xref=GeneID:107816087] [protein=pentatricopeptide repeat-containing protein At5g27460-like] [protein_id=XP_016497245.1] [location=join(24556..24599,24695..24947,25350..26585)] [gbkey=CDS]
Sequence

ATGCTATTCAAGGTAGTTGGCTTCAATCTTTCAAGATTTCAATGCTCATGGACATGGAGA
TATGTGTTGTCACGATCATGCTCGAGCTCAGCCAACAAAACGACGCTATTAAACAGCAGT
TACCCCAGTGGGTTTGATCTAAAAAGACGAATTTTGAAGGTGGTTTCATCAAGTGGGAAC
ACGGCGAGGAGTGTGCTTCAGAATTGGGTGGATGAAGGCCGTAAAATTTCTGTACCCGAG
CTCAGGATCGTTACCCGGCAGCTCGTGAAACAACTTCGTTTCAAACCCGCTCTGGAGATA
CTTAACTGGATGGAAACTCAACACAGATCTCACATGTTAGCTTCTGATTACGCCATGAGA
TTGGAACTAACTGTGAAAGAACATGGTAGCACAGAAGCTGAAAGATATTTTGACAGTTTA
ACAAGCACTTTTTTACGGAAAGCTGCTTCCGTCCCTCTTCTTCGTTGTTATGTTAAAGAA
AGGTCCGCTGAGAAGGCTGAAGCTTTCATGCTAAAGATAAACAGGTTGGGACTTGCTCTG
AGCCCTCATCTGTTTAATGAAATGATGAAGCTTTATATGGCTACATCTCAGTACCAGAAA
GTATTATCTGTCATTTTGCAAATGAAGCAAAACCGAATATCCTTAAATGTTCTCTCCTAT
AATTTCTGGATGGACGCATGTGGGAAGCTCTCTGGGGTCGAATCAGCAGAGATGGTATAC
AAAGAAATGCAGAGCAACCAAAATGTAGAAGTGGGATGGACCTCTTTATCTACATTAGCG
AATATTTATATGAAAGCAGGACTGACGGATAAGGCCTTTTTGGCCCTAAAAATTGCTGAA
AAGAAAATATCCAAAAGTACTCACCGTCCTTACTTCTTTCTCATTACGCAGTATGCTTCC
TTGAATAACAAAGATGGAGTACTTCGGGTCTGGGAAGCTTCTAATGCAGTAAATTCTCAG
ATGACTTGTGCTAATTACATGTGTATTTTGTCATCTTTGGTGAAGCTTGGCGACATGAGA
GAAGCCGAGAGAATTTTTGCAGAATGGGAGTCTCAATGCAGGACATATGACATTAGGGTC
TCCAACATACTTCTCGGTGGATACATGAGAAATGGATCAGTGGAAAAAGCTGAATCATTA
CATTATCGCACGTTGGAGAAAGGTGGACGTCCAAATTCTAAAACCTGGGAGATACTGGTG
GAGGGCTGGATAAGAAGTCAACAAATGGATAAAGCTATTGATGCCTTGAAAAGTGGTCTT
GCTGCTCTAAAACATTATGATTGGAGGCCTTCACCAAGTATTGTTGTCGCCATTGCAGAA
TATTTCGAAGAAACTAGAAATTTTGAGAATGCTATGGAGTTTCTTAAGACTCTTAGACAT
TTTCGTCTTGCTAATTTGCAAGTGTACAAGTCATTGCTTAGAATGCAAACCTCAAGAGAA
GAAAGTCCACAGGACATCCTTGATATGATGCAGAAGGATGGAATTGACGTGGATGATGAG
ACCTCTGTCATATGTTCAGGCATTTTGCATTGA

Peptide Sequence

PEP ID

XP_016497245.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At5g27460-like [Nicotiana tabacum]
Sequence

MLFKVVGFNLSRFQCSWTWRYVLSRSCSSSANKTTLLNSSYPSGFDLKRRILKVVSSSGN
TARSVLQNWVDEGRKISVPELRIVTRQLVKQLRFKPALEILNWMETQHRSHMLASDYAMR
LELTVKEHGSTEAERYFDSLTSTFLRKAASVPLLRCYVKERSAEKAEAFMLKINRLGLAL
SPHLFNEMMKLYMATSQYQKVLSVILQMKQNRISLNVLSYNFWMDACGKLSGVESAEMVY
KEMQSNQNVEVGWTSLSTLANIYMKAGLTDKAFLALKIAEKKISKSTHRPYFFLITQYAS
LNNKDGVLRVWEASNAVNSQMTCANYMCILSSLVKLGDMREAERIFAEWESQCRTYDIRV
SNILLGGYMRNGSVEKAESLHYRTLEKGGRPNSKTWEILVEGWIRSQQMDKAIDALKSGL
AALKHYDWRPSPSIVVAIAEYFEETRNFENAMEFLKTLRHFRLANLQVYKSLLRMQTSRE
ESPQDILDMMQKDGIDVDDETSVICSGILH

Transcript Sequence

Gene sequence data has not been registered.